Creating a Cellular Component (CC) only annotation
- Click on the arrow to the left of the ‘Create Activity’ icon.
- Select ‘Create New CC Annotation’.
- Using C. elegans as an example:
- Type in gene name: skn-1
- Select the WBGene entry from the dropdown list
- Gene products link out to respective gene product pages via dbxrefs.yaml
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Note that the CC only form creates annotations stating only that a gene product is ‘located in’ a given GO CC and is not making any claims about where the MF of that gene product may occur.
- Add the CC
- Search for ‘nucleus’
- Autocomplete options are presented in a pop-up window
- Terms link out to AmiGO
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Evidence code autocomplete using ECO term names
- Search for ‘direct assay’
- GO codes are indicated with bold three-letter GO code
- Add a reference. Two options:
- Cut and paste a DB and id, e.g. PMID:30442878 OR
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Click on the +/lines symbol
- Pop-up appears with a select drop-down of dbs for references: PMID, DOI, GO_REF
- Select PMID
- Add identifier: 30442878
- Adding contextual information to a CC only annotation can be done as for Activity Units.