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Class: Activity

An individual activity in a causal model, representing the individual molecular activity of a single gene product or complex in the context of a particular model

URI: [gocam:Activity](https://w3id.org/gocam/Activity)
classDiagram class Activity click Activity href "../Activity/" Activity : causal_associations Activity --> "*" CausalAssociation : causal_associations click CausalAssociation href "../CausalAssociation/" Activity : enabled_by Activity --> "0..1 _recommended_" EnabledByAssociation : enabled_by click EnabledByAssociation href "../EnabledByAssociation/" Activity : happens_during Activity --> "0..1" PhaseAssociation : happens_during click PhaseAssociation href "../PhaseAssociation/" Activity : id Activity : molecular_associations Activity --> "*" MoleculeAssociation : molecular_associations click MoleculeAssociation href "../MoleculeAssociation/" Activity : molecular_function Activity --> "0..1 _recommended_" MolecularFunctionAssociation : molecular_function click MolecularFunctionAssociation href "../MolecularFunctionAssociation/" Activity : occurs_in Activity --> "0..1 _recommended_" CellularAnatomicalEntityAssociation : occurs_in click CellularAnatomicalEntityAssociation href "../CellularAnatomicalEntityAssociation/" Activity : part_of Activity --> "0..1 _recommended_" BiologicalProcessAssociation : part_of click BiologicalProcessAssociation href "../BiologicalProcessAssociation/" Activity : provenances Activity --> "*" ProvenanceInfo : provenances click ProvenanceInfo href "../ProvenanceInfo/"
## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [id](id.md) | 1
[Uriorcurie](Uriorcurie.md) | Identifier of the activity unit | direct | | [enabled_by](enabled_by.md) | 0..1 _recommended_
[EnabledByAssociation](EnabledByAssociation.md) | The gene product or complex that carries out the activity | direct | | [molecular_function](molecular_function.md) | 0..1 _recommended_
[MolecularFunctionAssociation](MolecularFunctionAssociation.md) | The molecular function that is carried out by the gene product or complex | direct | | [occurs_in](occurs_in.md) | 0..1 _recommended_
[CellularAnatomicalEntityAssociation](CellularAnatomicalEntityAssociation.md) | The cellular location in which the activity occurs | direct | | [part_of](part_of.md) | 0..1 _recommended_
[BiologicalProcessAssociation](BiologicalProcessAssociation.md) | The larger biological process in which the activity is a part | direct | | [happens_during](happens_during.md) | 0..1
[PhaseAssociation](PhaseAssociation.md) | The phase during which the activity takes place | direct | | [molecular_associations](molecular_associations.md) | *
[MoleculeAssociation](MoleculeAssociation.md) | Associations between the activity and molecules that are relevant to it | direct | | [causal_associations](causal_associations.md) | *
[CausalAssociation](CausalAssociation.md) | The causal associations that flow out of this activity | direct | | [provenances](provenances.md) | *
[ProvenanceInfo](ProvenanceInfo.md) | Provenance information for the activity | direct | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [Model](Model.md) | [activities](activities.md) | range | [Activity](Activity.md) | | [CausalAssociation](CausalAssociation.md) | [downstream_activity](downstream_activity.md) | range | [Activity](Activity.md) | | [QueryIndex](QueryIndex.md) | [start_activities](start_activities.md) | range | [Activity](Activity.md) | | [QueryIndex](QueryIndex.md) | [end_activities](end_activities.md) | range | [Activity](Activity.md) | | [QueryIndex](QueryIndex.md) | [intermediate_activities](intermediate_activities.md) | range | [Activity](Activity.md) | | [QueryIndex](QueryIndex.md) | [singleton_activities](singleton_activities.md) | range | [Activity](Activity.md) | ## Aliases * annoton ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/gocam ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | gocam:Activity | | native | gocam:Activity | ## LinkML Source ### Direct 
name: Activity
description: An individual activity in a causal model, representing the individual
  molecular activity of a single gene product or complex in the context of a particular
  model
from_schema: https://w3id.org/gocam
aliases:
- annoton
attributes:
  id:
    name: id
    id_prefixes:
    - gomodel
    description: Identifier of the activity unit.
    comments:
    - Typically does not need to be exposed to end-user, this exists to allow activity
      flows
    examples:
    - value: gomodel:63f809ec00000701/63f809ec00000706
      description: A activity of the model representing alpha-aminoacyl-tRNA binding
        enabled by NEMF
    from_schema: https://w3id.org/gocam
    identifier: true
    domain_of:
    - Model
    - Activity
    - MoleculeNode
    - Object
    range: uriorcurie
  enabled_by:
    name: enabled_by
    description: The gene product or complex that carries out the activity
    from_schema: https://w3id.org/gocam
    rank: 1000
    domain_of:
    - Activity
    range: EnabledByAssociation
    recommended: true
    inlined: true
  molecular_function:
    name: molecular_function
    description: The molecular function that is carried out by the gene product or
      complex
    todos:
    - currently BP, CC etc are at the level of the activity, not the MolecularFunctionAssociation
    from_schema: https://w3id.org/gocam
    rank: 1000
    domain_of:
    - Activity
    range: MolecularFunctionAssociation
    recommended: true
    inlined: true
  occurs_in:
    name: occurs_in
    description: The cellular location in which the activity occurs
    from_schema: https://w3id.org/gocam
    rank: 1000
    domain_of:
    - Activity
    range: CellularAnatomicalEntityAssociation
    recommended: true
    inlined: true
  part_of:
    name: part_of
    description: The larger biological process in which the activity is a part
    from_schema: https://w3id.org/gocam
    domain_of:
    - Activity
    - EnabledByGeneProductAssociation
    - ProteinComplexHasPartAssociation
    - BiologicalProcessAssociation
    - CellularAnatomicalEntityAssociation
    - CellTypeAssociation
    - GrossAnatomyAssociation
    range: BiologicalProcessAssociation
    recommended: true
    inlined: true
  happens_during:
    name: happens_during
    description: The phase during which the activity takes place
    from_schema: https://w3id.org/gocam
    rank: 1000
    domain_of:
    - Activity
    - BiologicalProcessAssociation
    range: PhaseAssociation
    inlined: true
  molecular_associations:
    name: molecular_associations
    description: Associations between the activity and molecules that are relevant
      to it. This includes molecules that are products/substrates or regulators of
      the activity.
    from_schema: https://w3id.org/gocam
    rank: 1000
    domain_of:
    - Activity
    range: MoleculeAssociation
    multivalued: true
    inlined_as_list: true
  causal_associations:
    name: causal_associations
    description: The causal associations that flow out of this activity
    comments:
    - All activities in a model must be connected to at least one other activity.
      If a an activity has no outgoing activities (i.e the value of this slot is empty)
      then it is a terminal activity in the model. If an activity has no incoming
      activities, it is an initial activity.
    from_schema: https://w3id.org/gocam
    rank: 1000
    domain_of:
    - Activity
    range: CausalAssociation
    multivalued: true
    inlined_as_list: true
  provenances:
    name: provenances
    description: Provenance information for the activity
    from_schema: https://w3id.org/gocam
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined_as_list: true
### Induced 
name: Activity
description: An individual activity in a causal model, representing the individual
  molecular activity of a single gene product or complex in the context of a particular
  model
from_schema: https://w3id.org/gocam
aliases:
- annoton
attributes:
  id:
    name: id
    id_prefixes:
    - gomodel
    description: Identifier of the activity unit.
    comments:
    - Typically does not need to be exposed to end-user, this exists to allow activity
      flows
    examples:
    - value: gomodel:63f809ec00000701/63f809ec00000706
      description: A activity of the model representing alpha-aminoacyl-tRNA binding
        enabled by NEMF
    from_schema: https://w3id.org/gocam
    identifier: true
    owner: Activity
    domain_of:
    - Model
    - Activity
    - MoleculeNode
    - Object
    range: uriorcurie
    required: true
  enabled_by:
    name: enabled_by
    description: The gene product or complex that carries out the activity
    from_schema: https://w3id.org/gocam
    rank: 1000
    owner: Activity
    domain_of:
    - Activity
    range: EnabledByAssociation
    recommended: true
    inlined: true
  molecular_function:
    name: molecular_function
    description: The molecular function that is carried out by the gene product or
      complex
    todos:
    - currently BP, CC etc are at the level of the activity, not the MolecularFunctionAssociation
    from_schema: https://w3id.org/gocam
    rank: 1000
    owner: Activity
    domain_of:
    - Activity
    range: MolecularFunctionAssociation
    recommended: true
    inlined: true
  occurs_in:
    name: occurs_in
    description: The cellular location in which the activity occurs
    from_schema: https://w3id.org/gocam
    rank: 1000
    owner: Activity
    domain_of:
    - Activity
    range: CellularAnatomicalEntityAssociation
    recommended: true
    inlined: true
  part_of:
    name: part_of
    description: The larger biological process in which the activity is a part
    from_schema: https://w3id.org/gocam
    owner: Activity
    domain_of:
    - Activity
    - EnabledByGeneProductAssociation
    - ProteinComplexHasPartAssociation
    - BiologicalProcessAssociation
    - CellularAnatomicalEntityAssociation
    - CellTypeAssociation
    - GrossAnatomyAssociation
    range: BiologicalProcessAssociation
    recommended: true
    inlined: true
  happens_during:
    name: happens_during
    description: The phase during which the activity takes place
    from_schema: https://w3id.org/gocam
    rank: 1000
    owner: Activity
    domain_of:
    - Activity
    - BiologicalProcessAssociation
    range: PhaseAssociation
    inlined: true
  molecular_associations:
    name: molecular_associations
    description: Associations between the activity and molecules that are relevant
      to it. This includes molecules that are products/substrates or regulators of
      the activity.
    from_schema: https://w3id.org/gocam
    rank: 1000
    owner: Activity
    domain_of:
    - Activity
    range: MoleculeAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  causal_associations:
    name: causal_associations
    description: The causal associations that flow out of this activity
    comments:
    - All activities in a model must be connected to at least one other activity.
      If a an activity has no outgoing activities (i.e the value of this slot is empty)
      then it is a terminal activity in the model. If an activity has no incoming
      activities, it is an initial activity.
    from_schema: https://w3id.org/gocam
    rank: 1000
    owner: Activity
    domain_of:
    - Activity
    range: CausalAssociation
    multivalued: true
    inlined: true
    inlined_as_list: true
  provenances:
    name: provenances
    description: Provenance information for the activity
    from_schema: https://w3id.org/gocam
    owner: Activity
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined: true
    inlined_as_list: true