Class: AnnotationExtension

Annotation extensions allow GO terms in annotations to be further specified, using gene products, chemicals, cell types, anatomical structures, to provide additional biological context.

URI: go_standard_annotation_schema:AnnotationExtension

 classDiagram
    class AnnotationExtension
    click AnnotationExtension href "../AnnotationExtension/"
      AnnotationExtension : extension_relation

      AnnotationExtension : extension_term

Slots

Name	Cardinality and Range	Description	Inheritance
extension_relation	1 RoIdentifier	A term from the Relation Ontology that describes how the GO term in the exten...	direct
extension_term	1 ExternalIdentifier	The gene product, chemical, cell type, anatomical structure, or other entity ...	direct

Usages

used by	used in	type	used
Annotation	annotation_extensions	range	AnnotationExtension

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/geneontology/go-standard-annotation-schema

Mappings

Mapping Type	Mapped Value
self	go_standard_annotation_schema:AnnotationExtension
native	go_standard_annotation_schema:AnnotationExtension

LinkML Source

Direct

name: AnnotationExtension
description: Annotation extensions allow GO terms in annotations to be further specified,
  using gene products, chemicals, cell types, anatomical structures, to provide additional
  biological context.
from_schema: https://w3id.org/geneontology/go-standard-annotation-schema
slots:
- extension_relation
- extension_term

Induced

name: AnnotationExtension
description: Annotation extensions allow GO terms in annotations to be further specified,
  using gene products, chemicals, cell types, anatomical structures, to provide additional
  biological context.
from_schema: https://w3id.org/geneontology/go-standard-annotation-schema
attributes:
  extension_relation:
    name: extension_relation
    description: A term from the Relation Ontology that describes how the GO term
      in the extension relates to the GO term in the annotation.
    from_schema: https://w3id.org/geneontology/go-standard-annotation-schema
    rank: 1000
    owner: AnnotationExtension
    domain_of:
    - AnnotationExtension
    range: ro_identifier
    required: true
  extension_term:
    name: extension_term
    description: The gene product, chemical, cell type, anatomical structure, or other
      entity that is used to further specify the GO term in the annotation.
    from_schema: https://w3id.org/geneontology/go-standard-annotation-schema
    rank: 1000
    owner: AnnotationExtension
    domain_of:
    - AnnotationExtension
    range: external_identifier
    required: true