Slot: annotation_extensions
Annotation extensions allow GO terms in annotations to be further specified, using
gene products, chemicals, cell types, anatomical structures, to provide additional
biological context. The cross-reference is prefaced by an appropriate relationship
from the Relation Ontology.
URI: go_standard_annotation_schema:annotation_extensions
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Annotation | An association between a gene product and a GO term, with an evidence code, a | no |
Properties
Type and Range
| Property | Value |
|---|---|
| Range | AnnotationExtension |
| Domain Of | Annotation |
Cardinality and Requirements
| Property | Value |
|---|---|
| Multivalued | Yes |
TODOs
- The GPAD spec makes a distinction between pipe- and comma-separated lists of annotation extensions. Decide if and how this should be represented in the schema.
- Annotation extensions do not have a unique identifier, so the schema indicates they are inlined as a list. This makes change operations that target a specific annotation extension more difficult.
Identifier and Mapping Information
Schema Source
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | go_standard_annotation_schema:annotation_extensions |
| native | go_standard_annotation_schema:annotation_extensions |
LinkML Source
name: annotation_extensions
description: 'Annotation extensions allow GO terms in annotations to be further specified,
using
gene products, chemicals, cell types, anatomical structures, to provide additional
biological context. The cross-reference is prefaced by an appropriate relationship
from the Relation Ontology.'
todos:
- The GPAD spec makes a distinction between pipe- and comma-separated lists of annotation
extensions. Decide if and how this should be represented in the schema.
- Annotation extensions do not have a unique identifier, so the schema indicates they
are inlined as a list. This makes change operations that target a specific annotation
extension more difficult.
from_schema: https://w3id.org/geneontology/go-standard-annotation-schema
rank: 1000
domain_of:
- Annotation
range: AnnotationExtension
required: false
multivalued: true
inlined: true
inlined_as_list: true