Class: TermAssociation

An association between an activity and a term, potentially with extensions. This is an abstract class for grouping purposes, it should not be directly instantiated, instead a subclass should be instantiated.

NOTE: this is an abstract class and should not be instantiated directly

URI: gocam:TermAssociation

classDiagram class TermAssociation click TermAssociation href "../TermAssociation" Association <|-- TermAssociation click Association href "../Association" TermAssociation <|-- MolecularFunctionAssociation click MolecularFunctionAssociation href "../MolecularFunctionAssociation" TermAssociation <|-- BiologicalProcessAssociation click BiologicalProcessAssociation href "../BiologicalProcessAssociation" TermAssociation <|-- CellularAnatomicalEntityAssociation click CellularAnatomicalEntityAssociation href "../CellularAnatomicalEntityAssociation" TermAssociation <|-- CellTypeAssociation click CellTypeAssociation href "../CellTypeAssociation" TermAssociation <|-- GrossAnatomyAssociation click GrossAnatomyAssociation href "../GrossAnatomyAssociation" TermAssociation <|-- MoleculeAssociation click MoleculeAssociation href "../MoleculeAssociation" TermAssociation : evidence TermAssociation --> "*" EvidenceItem : evidence click EvidenceItem href "../EvidenceItem" TermAssociation : provenances TermAssociation --> "*" ProvenanceInfo : provenances click ProvenanceInfo href "../ProvenanceInfo" TermAssociation : term TermAssociation --> "0..1" TermObject : term click TermObject href "../TermObject" TermAssociation : type

Inheritance

Association
- TermAssociation

Slots

Name	Cardinality and Range	Description	Inheritance
term	0..1 TermObject	The ontology term that describes the nature of the association	direct
type	0..1 String	The type of association	Association
evidence	* EvidenceItem	The set of evidence items that support the association	Association
provenances	* ProvenanceInfo	The set of provenance objects that provide metadata about who made the associ...	Association

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/gocam

Mappings

Mapping Type	Mapped Value
self	gocam:TermAssociation
native	gocam:TermAssociation

LinkML Source

Direct

name: TermAssociation
description: An association between an activity and a term, potentially with extensions.
  This is an abstract class for grouping purposes, it should not be directly instantiated,
  instead a subclass should be instantiated.
from_schema: https://w3id.org/gocam
is_a: Association
abstract: true
attributes:
  term:
    name: term
    description: The ontology term that describes the nature of the association
    from_schema: https://w3id.org/gocam
    domain_of:
    - EvidenceItem
    - EnabledByAssociation
    - TermAssociation
    range: TermObject

Induced

name: TermAssociation
description: An association between an activity and a term, potentially with extensions.
  This is an abstract class for grouping purposes, it should not be directly instantiated,
  instead a subclass should be instantiated.
from_schema: https://w3id.org/gocam
is_a: Association
abstract: true
attributes:
  term:
    name: term
    description: The ontology term that describes the nature of the association
    from_schema: https://w3id.org/gocam
    alias: term
    owner: TermAssociation
    domain_of:
    - EvidenceItem
    - EnabledByAssociation
    - TermAssociation
    range: TermObject
  type:
    name: type
    description: The type of association.
    comments:
    - when instantiating Association objects in Python and other languages, it isn't
      necessary to populate this, it is auto-populated from the object class.
    from_schema: https://w3id.org/gocam
    rank: 1000
    designates_type: true
    alias: type
    owner: TermAssociation
    domain_of:
    - Association
    - Object
    range: string
  evidence:
    name: evidence
    description: The set of evidence items that support the association.
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: evidence
    owner: TermAssociation
    domain_of:
    - Association
    range: EvidenceItem
    multivalued: true
    inlined: true
  provenances:
    name: provenances
    description: The set of provenance objects that provide metadata about who made
      the association.
    from_schema: https://w3id.org/gocam
    alias: provenances
    owner: TermAssociation
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined: true
    inlined_as_list: true