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Class: PhaseAssociation

An association between an activity or biological process and a phase term

URI: gocam:PhaseAssociation

classDiagram class PhaseAssociation click PhaseAssociation href "../PhaseAssociation/" TermAssociation <|-- PhaseAssociation click TermAssociation href "../TermAssociation/" PhaseAssociation : evidence PhaseAssociation --> "*" EvidenceItem : evidence click EvidenceItem href "../EvidenceItem/" PhaseAssociation : provenances PhaseAssociation --> "*" ProvenanceInfo : provenances click ProvenanceInfo href "../ProvenanceInfo/" PhaseAssociation : term PhaseAssociation --> "0..1" PhaseTermObject : term click PhaseTermObject href "../PhaseTermObject/" PhaseAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
term 0..1
PhaseTermObject		 The phase ontology term associated with the biological process (not the relat... TermAssociation
type 0..1
String		 The type of association Association
evidence *
EvidenceItem		 The set of evidence items that support the association Association
provenances *
ProvenanceInfo		 The set of provenance objects that provide metadata about who made the associ... Association

Usages

used by used in type used
Activity happens_during range PhaseAssociation
BiologicalProcessAssociation happens_during range PhaseAssociation

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/gocam

Mappings

Mapping Type Mapped Value
self gocam:PhaseAssociation
native gocam:PhaseAssociation

LinkML Source

Direct

name: PhaseAssociation
description: An association between an activity or biological process and a phase
  term
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    description: The phase ontology term associated with the biological process (not
      the relation type)
    range: PhaseTermObject

Induced

name: PhaseAssociation
description: An association between an activity or biological process and a phase
  term
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    description: The phase ontology term associated with the biological process (not
      the relation type)
    range: PhaseTermObject
attributes:
  term:
    name: term
    description: The phase ontology term associated with the biological process (not
      the relation type)
    from_schema: https://w3id.org/gocam
    alias: term
    owner: PhaseAssociation
    domain_of:
    - MoleculeNode
    - EvidenceItem
    - EnabledByAssociation
    - TermAssociation
    range: PhaseTermObject
  type:
    name: type
    description: The type of association.
    comments:
    - when instantiating Association objects in Python and other languages, it isn't
      necessary to populate this, it is auto-populated from the object class.
    from_schema: https://w3id.org/gocam
    rank: 1000
    designates_type: true
    alias: type
    owner: PhaseAssociation
    domain_of:
    - Association
    - Object
    range: string
  evidence:
    name: evidence
    description: The set of evidence items that support the association.
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: evidence
    owner: PhaseAssociation
    domain_of:
    - Association
    range: EvidenceItem
    multivalued: true
    inlined: true
  provenances:
    name: provenances
    description: The set of provenance objects that provide metadata about who made
      the association.
    from_schema: https://w3id.org/gocam
    alias: provenances
    owner: PhaseAssociation
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined: true
    inlined_as_list: true