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Class: PartOfProteinComplexAssociation

An association between a gene product and a protein complex that it is a part of.

URI: gocam:PartOfProteinComplexAssociation

classDiagram class PartOfProteinComplexAssociation click PartOfProteinComplexAssociation href "../PartOfProteinComplexAssociation/" TermAssociation <|-- PartOfProteinComplexAssociation click TermAssociation href "../TermAssociation/" PartOfProteinComplexAssociation : evidence PartOfProteinComplexAssociation --> "*" EvidenceItem : evidence click EvidenceItem href "../EvidenceItem/" PartOfProteinComplexAssociation : has_part PartOfProteinComplexAssociation --> "*" ProteinComplexHasPartAssociation : has_part click ProteinComplexHasPartAssociation href "../ProteinComplexHasPartAssociation/" PartOfProteinComplexAssociation : provenances PartOfProteinComplexAssociation --> "*" ProvenanceInfo : provenances click ProvenanceInfo href "../ProvenanceInfo/" PartOfProteinComplexAssociation : term PartOfProteinComplexAssociation --> "0..1" ProteinComplexTermObject : term click ProteinComplexTermObject href "../ProteinComplexTermObject/" PartOfProteinComplexAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_part *
ProteinComplexHasPartAssociation		 Associations between the complex and gene products that are part of it direct
term 0..1
ProteinComplexTermObject		 The protein complex that the gene product is a part of TermAssociation
type 0..1
String		 The type of association Association
evidence *
EvidenceItem		 The set of evidence items that support the association Association
provenances *
ProvenanceInfo		 The set of provenance objects that provide metadata about who made the associ... Association

Usages

used by used in type used
EnabledByGeneProductAssociation part_of range PartOfProteinComplexAssociation
ProteinComplexHasPartAssociation part_of range PartOfProteinComplexAssociation

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/gocam

Mappings

Mapping Type Mapped Value
self gocam:PartOfProteinComplexAssociation
native gocam:PartOfProteinComplexAssociation

LinkML Source

Direct

name: PartOfProteinComplexAssociation
description: An association between a gene product and a protein complex that it is
  a part of.
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    description: The protein complex that the gene product is a part of.
    range: ProteinComplexTermObject
attributes:
  has_part:
    name: has_part
    description: Associations between the complex and gene products that are part
      of it.
    from_schema: https://w3id.org/gocam
    domain_of:
    - EnabledByProteinComplexAssociation
    - PartOfProteinComplexAssociation
    range: ProteinComplexHasPartAssociation
    multivalued: true

Induced

name: PartOfProteinComplexAssociation
description: An association between a gene product and a protein complex that it is
  a part of.
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    description: The protein complex that the gene product is a part of.
    range: ProteinComplexTermObject
attributes:
  has_part:
    name: has_part
    description: Associations between the complex and gene products that are part
      of it.
    from_schema: https://w3id.org/gocam
    alias: has_part
    owner: PartOfProteinComplexAssociation
    domain_of:
    - EnabledByProteinComplexAssociation
    - PartOfProteinComplexAssociation
    range: ProteinComplexHasPartAssociation
    multivalued: true
  term:
    name: term
    description: The protein complex that the gene product is a part of.
    from_schema: https://w3id.org/gocam
    alias: term
    owner: PartOfProteinComplexAssociation
    domain_of:
    - MoleculeNode
    - EvidenceItem
    - EnabledByAssociation
    - TermAssociation
    range: ProteinComplexTermObject
  type:
    name: type
    description: The type of association.
    comments:
    - when instantiating Association objects in Python and other languages, it isn't
      necessary to populate this, it is auto-populated from the object class.
    from_schema: https://w3id.org/gocam
    rank: 1000
    designates_type: true
    alias: type
    owner: PartOfProteinComplexAssociation
    domain_of:
    - Association
    - Object
    range: string
  evidence:
    name: evidence
    description: The set of evidence items that support the association.
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: evidence
    owner: PartOfProteinComplexAssociation
    domain_of:
    - Association
    range: EvidenceItem
    multivalued: true
    inlined: true
  provenances:
    name: provenances
    description: The set of provenance objects that provide metadata about who made
      the association.
    from_schema: https://w3id.org/gocam
    alias: provenances
    owner: PartOfProteinComplexAssociation
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined: true
    inlined_as_list: true