Class: MoleculeNode

An individual molecule or chemical entity in a causal model, representing a specific occurrence of a molecule that participates in activities as an input or output and may be localized to a particular cellular location.

URI: gocam:MoleculeNode

classDiagram class MoleculeNode click MoleculeNode href "../MoleculeNode/" MoleculeNode : id MoleculeNode : located_in MoleculeNode --> "0..1" CellularAnatomicalEntityAssociation : located_in click CellularAnatomicalEntityAssociation href "../CellularAnatomicalEntityAssociation/" MoleculeNode : term MoleculeNode --> "1" MoleculeTermObject : term click MoleculeTermObject href "../MoleculeTermObject/"

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 Uriorcurie	Identifier of the molecule node	direct
term	1 MoleculeTermObject	The molecule term associated with the molecule node	direct
located_in	0..1 CellularAnatomicalEntityAssociation	The cellular location in which the molecule is located	direct

Usages

used by	used in	type	used
Model	molecules	range	MoleculeNode
MoleculeAssociation	molecule	range	MoleculeNode

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/gocam

Mappings

Mapping Type	Mapped Value
self	gocam:MoleculeNode
native	gocam:MoleculeNode

LinkML Source

Direct

name: MoleculeNode
description: An individual molecule or chemical entity in a causal model, representing
  a specific occurrence of a molecule that participates in activities as an input
  or output and may be localized to a particular cellular location.
from_schema: https://w3id.org/gocam
attributes:
  id:
    name: id
    id_prefixes:
    - gomodel
    description: Identifier of the molecule node.
    examples:
    - value: gomodel:63f809ec00000701/63f809ec00000733
      description: A molecule node of the model representing tRNA precursor (CHEBI:10668)
        that is an input to tRNA-specific ribonuclease activity (GO:0004549)
    from_schema: https://w3id.org/gocam
    identifier: true
    domain_of:
    - Model
    - Activity
    - MoleculeNode
    - Object
    range: uriorcurie
    required: true
  term:
    name: term
    description: The molecule term associated with the molecule node
    from_schema: https://w3id.org/gocam
    domain_of:
    - MoleculeNode
    - EvidenceItem
    - EnabledByAssociation
    - TermAssociation
    range: MoleculeTermObject
    required: true
  located_in:
    name: located_in
    description: The cellular location in which the molecule is located
    from_schema: https://w3id.org/gocam
    rank: 1000
    domain_of:
    - MoleculeNode
    range: CellularAnatomicalEntityAssociation
    inlined: true

Induced

name: MoleculeNode
description: An individual molecule or chemical entity in a causal model, representing
  a specific occurrence of a molecule that participates in activities as an input
  or output and may be localized to a particular cellular location.
from_schema: https://w3id.org/gocam
attributes:
  id:
    name: id
    id_prefixes:
    - gomodel
    description: Identifier of the molecule node.
    examples:
    - value: gomodel:63f809ec00000701/63f809ec00000733
      description: A molecule node of the model representing tRNA precursor (CHEBI:10668)
        that is an input to tRNA-specific ribonuclease activity (GO:0004549)
    from_schema: https://w3id.org/gocam
    identifier: true
    alias: id
    owner: MoleculeNode
    domain_of:
    - Model
    - Activity
    - MoleculeNode
    - Object
    range: uriorcurie
    required: true
  term:
    name: term
    description: The molecule term associated with the molecule node
    from_schema: https://w3id.org/gocam
    alias: term
    owner: MoleculeNode
    domain_of:
    - MoleculeNode
    - EvidenceItem
    - EnabledByAssociation
    - TermAssociation
    range: MoleculeTermObject
    required: true
  located_in:
    name: located_in
    description: The cellular location in which the molecule is located
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: located_in
    owner: MoleculeNode
    domain_of:
    - MoleculeNode
    range: CellularAnatomicalEntityAssociation
    inlined: true