Class: MoleculeAssociation

An association between an activity and a molecule node

classDiagram class MoleculeAssociation click MoleculeAssociation href "../MoleculeAssociation/" Association <|-- MoleculeAssociation click Association href "../Association/" MoleculeAssociation : evidence MoleculeAssociation --> "*" EvidenceItem : evidence click EvidenceItem href "../EvidenceItem/" MoleculeAssociation : molecule MoleculeAssociation --> "0..1" MoleculeNode : molecule click MoleculeNode href "../MoleculeNode/" MoleculeAssociation : provenances MoleculeAssociation --> "*" ProvenanceInfo : provenances click ProvenanceInfo href "../ProvenanceInfo/" MoleculeAssociation : type

Inheritance

Association
- MoleculeAssociation

Slots

Name	Cardinality and Range	Description	Inheritance
molecule	0..1 MoleculeNode	The molecule node that is associated with this activity	direct
type	0..1 String	The type of association	Association
evidence	* EvidenceItem	The set of evidence items that support the association	Association
provenances	* ProvenanceInfo	The set of provenance objects that provide metadata about who made the associ...	Association

Usages

used by	used in	type	used
Activity	has_input	range	MoleculeAssociation
Activity	has_primary_input	range	MoleculeAssociation
Activity	has_output	range	MoleculeAssociation
Activity	has_primary_output	range	MoleculeAssociation

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/gocam

Mappings

Mapping Type	Mapped Value
self	gocam:MoleculeAssociation
native	gocam:MoleculeAssociation

LinkML Source

Direct

name: MoleculeAssociation
description: An association between an activity and a molecule node
from_schema: https://w3id.org/gocam
is_a: Association
attributes:
  molecule:
    name: molecule
    description: The molecule node that is associated with this activity
    from_schema: https://w3id.org/gocam
    rank: 1000
    domain_of:
    - MoleculeAssociation
    range: MoleculeNode

Induced

name: MoleculeAssociation
description: An association between an activity and a molecule node
from_schema: https://w3id.org/gocam
is_a: Association
attributes:
  molecule:
    name: molecule
    description: The molecule node that is associated with this activity
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: molecule
    owner: MoleculeAssociation
    domain_of:
    - MoleculeAssociation
    range: MoleculeNode
  type:
    name: type
    description: The type of association.
    comments:
    - when instantiating Association objects in Python and other languages, it isn't
      necessary to populate this, it is auto-populated from the object class.
    from_schema: https://w3id.org/gocam
    rank: 1000
    designates_type: true
    alias: type
    owner: MoleculeAssociation
    domain_of:
    - Association
    - Object
    range: string
  evidence:
    name: evidence
    description: The set of evidence items that support the association.
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: evidence
    owner: MoleculeAssociation
    domain_of:
    - Association
    range: EvidenceItem
    multivalued: true
    inlined: true
  provenances:
    name: provenances
    description: The set of provenance objects that provide metadata about who made
      the association.
    from_schema: https://w3id.org/gocam
    alias: provenances
    owner: MoleculeAssociation
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined: true
    inlined_as_list: true