Class: MoleculeAssociation

An association between an activity and a molecule term

classDiagram class MoleculeAssociation click MoleculeAssociation href "../MoleculeAssociation" TermAssociation <|-- MoleculeAssociation click TermAssociation href "../TermAssociation" MoleculeAssociation : evidence MoleculeAssociation --> "*" EvidenceItem : evidence click EvidenceItem href "../EvidenceItem" MoleculeAssociation : provenances MoleculeAssociation --> "*" ProvenanceInfo : provenances click ProvenanceInfo href "../ProvenanceInfo" MoleculeAssociation : term MoleculeAssociation --> "0..1" MoleculeTermObject : term click MoleculeTermObject href "../MoleculeTermObject" MoleculeAssociation : type

Inheritance

Association
- TermAssociation
  - MoleculeAssociation

Slots

Name	Cardinality and Range	Description	Inheritance
term	0..1 MoleculeTermObject	The ontology term that describes the nature of the association	TermAssociation
type	0..1 String	The type of association	Association
evidence	* EvidenceItem	The set of evidence items that support the association	Association
provenances	* ProvenanceInfo	The set of provenance objects that provide metadata about who made the associ...	Association

Usages

used by	used in	type	used
Activity	has_input	range	MoleculeAssociation
Activity	has_primary_input	range	MoleculeAssociation
Activity	has_output	range	MoleculeAssociation
Activity	has_primary_output	range	MoleculeAssociation

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/gocam

Mappings

Mapping Type	Mapped Value
self	gocam:MoleculeAssociation
native	gocam:MoleculeAssociation

LinkML Source

Direct

name: MoleculeAssociation
description: An association between an activity and a molecule term
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    range: MoleculeTermObject

Induced

name: MoleculeAssociation
description: An association between an activity and a molecule term
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    range: MoleculeTermObject
attributes:
  term:
    name: term
    description: The ontology term that describes the nature of the association
    from_schema: https://w3id.org/gocam
    alias: term
    owner: MoleculeAssociation
    domain_of:
    - EvidenceItem
    - EnabledByAssociation
    - TermAssociation
    range: MoleculeTermObject
  type:
    name: type
    description: The type of association.
    comments:
    - when instantiating Association objects in Python and other languages, it isn't
      necessary to populate this, it is auto-populated from the object class.
    from_schema: https://w3id.org/gocam
    rank: 1000
    designates_type: true
    alias: type
    owner: MoleculeAssociation
    domain_of:
    - Association
    - Object
    range: string
  evidence:
    name: evidence
    description: The set of evidence items that support the association.
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: evidence
    owner: MoleculeAssociation
    domain_of:
    - Association
    range: EvidenceItem
    multivalued: true
    inlined: true
  provenances:
    name: provenances
    description: The set of provenance objects that provide metadata about who made
      the association.
    from_schema: https://w3id.org/gocam
    alias: provenances
    owner: MoleculeAssociation
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined: true
    inlined_as_list: true