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Class: MolecularFunctionAssociation

An association between an activity and a molecular function term

URI: gocam:MolecularFunctionAssociation

classDiagram class MolecularFunctionAssociation click MolecularFunctionAssociation href "../MolecularFunctionAssociation" TermAssociation <|-- MolecularFunctionAssociation click TermAssociation href "../TermAssociation" MolecularFunctionAssociation : evidence MolecularFunctionAssociation --> "*" EvidenceItem : evidence click EvidenceItem href "../EvidenceItem" MolecularFunctionAssociation : provenances MolecularFunctionAssociation --> "*" ProvenanceInfo : provenances click ProvenanceInfo href "../ProvenanceInfo" MolecularFunctionAssociation : term MolecularFunctionAssociation --> "0..1" MolecularFunctionTermObject : term click MolecularFunctionTermObject href "../MolecularFunctionTermObject" MolecularFunctionAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
term 0..1
MolecularFunctionTermObject		 The ontology term that describes the nature of the association TermAssociation
type 0..1
String		 Association
evidence *
EvidenceItem		 Association
provenances *
ProvenanceInfo		 Association

Usages

used by used in type used
Activity molecular_function range MolecularFunctionAssociation

TODOs

  • account for non-MF activity types in Reactome

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/gocam

Mappings

Mapping Type Mapped Value
self gocam:MolecularFunctionAssociation
native gocam:MolecularFunctionAssociation

LinkML Source

Direct

name: MolecularFunctionAssociation
description: An association between an activity and a molecular function term
todos:
- account for non-MF activity types in Reactome
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    range: MolecularFunctionTermObject

Induced

name: MolecularFunctionAssociation
description: An association between an activity and a molecular function term
todos:
- account for non-MF activity types in Reactome
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    range: MolecularFunctionTermObject
attributes:
  term:
    name: term
    description: The ontology term that describes the nature of the association
    from_schema: https://w3id.org/gocam
    alias: term
    owner: MolecularFunctionAssociation
    domain_of:
    - EvidenceItem
    - EnabledByAssociation
    - TermAssociation
    range: MolecularFunctionTermObject
  type:
    name: type
    from_schema: https://w3id.org/gocam
    rank: 1000
    designates_type: true
    alias: type
    owner: MolecularFunctionAssociation
    domain_of:
    - Association
    - Object
    range: string
  evidence:
    name: evidence
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: evidence
    owner: MolecularFunctionAssociation
    domain_of:
    - Association
    range: EvidenceItem
    multivalued: true
    inlined: true
  provenances:
    name: provenances
    from_schema: https://w3id.org/gocam
    alias: provenances
    owner: MolecularFunctionAssociation
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined: true
    inlined_as_list: true