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Class: MolecularFunctionAssociation

An association between an activity and a molecular function term

URI: gocam:MolecularFunctionAssociation

classDiagram class MolecularFunctionAssociation click MolecularFunctionAssociation href "../MolecularFunctionAssociation" TermAssociation <|-- MolecularFunctionAssociation click TermAssociation href "../TermAssociation" MolecularFunctionAssociation : evidence MolecularFunctionAssociation --> "*" EvidenceItem : evidence click EvidenceItem href "../EvidenceItem" MolecularFunctionAssociation : provenances MolecularFunctionAssociation --> "*" ProvenanceInfo : provenances click ProvenanceInfo href "../ProvenanceInfo" MolecularFunctionAssociation : term MolecularFunctionAssociation --> "0..1" MolecularFunctionTermObject : term click MolecularFunctionTermObject href "../MolecularFunctionTermObject" MolecularFunctionAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
term 0..1
MolecularFunctionTermObject		 The ontology term that describes the nature of the association TermAssociation
type 0..1
String		 The type of association Association
evidence *
EvidenceItem		 The set of evidence items that support the association Association
provenances *
ProvenanceInfo		 The set of provenance objects that provide metadata about who made the associ... Association

Usages

used by used in type used
Activity molecular_function range MolecularFunctionAssociation

TODOs

  • account for non-MF activity types in Reactome (MolecularEvent)

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/gocam

Mappings

Mapping Type Mapped Value
self gocam:MolecularFunctionAssociation
native gocam:MolecularFunctionAssociation

LinkML Source

Direct

name: MolecularFunctionAssociation
description: An association between an activity and a molecular function term
todos:
- account for non-MF activity types in Reactome (MolecularEvent)
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    range: MolecularFunctionTermObject

Induced

name: MolecularFunctionAssociation
description: An association between an activity and a molecular function term
todos:
- account for non-MF activity types in Reactome (MolecularEvent)
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    range: MolecularFunctionTermObject
attributes:
  term:
    name: term
    description: The ontology term that describes the nature of the association
    from_schema: https://w3id.org/gocam
    alias: term
    owner: MolecularFunctionAssociation
    domain_of:
    - EvidenceItem
    - EnabledByAssociation
    - TermAssociation
    range: MolecularFunctionTermObject
  type:
    name: type
    description: The type of association.
    comments:
    - when instantiating Association objects in Python and other languages, it isn't
      necessary to populate this, it is auto-populated from the object class.
    from_schema: https://w3id.org/gocam
    rank: 1000
    designates_type: true
    alias: type
    owner: MolecularFunctionAssociation
    domain_of:
    - Association
    - Object
    range: string
  evidence:
    name: evidence
    description: The set of evidence items that support the association.
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: evidence
    owner: MolecularFunctionAssociation
    domain_of:
    - Association
    range: EvidenceItem
    multivalued: true
    inlined: true
  provenances:
    name: provenances
    description: The set of provenance objects that provide metadata about who made
      the association.
    from_schema: https://w3id.org/gocam
    alias: provenances
    owner: MolecularFunctionAssociation
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined: true
    inlined_as_list: true