Class: Model

A model of a biological program consisting of a set of causally connected activities

classDiagram class Model click Model href "../Model" Model : activities Model --> "*" Activity : activities click Activity href "../Activity" Model : comments Model : id Model : objects Model --> "*" Object : objects click Object href "../Object" Model : provenances Model --> "*" ProvenanceInfo : provenances click ProvenanceInfo href "../ProvenanceInfo" Model : status Model --> "0..1" ModelStateEnum : status click ModelStateEnum href "../ModelStateEnum" Model : taxon Model --> "0..1" TaxonTermObject : taxon click TaxonTermObject href "../TaxonTermObject" Model : title

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 Uriorcurie	The identifier of the model	direct
title	0..1 String	The human-readable descriptive title of the model	direct
taxon	0..1 TaxonTermObject	The primary taxon that the model is about	direct
status	0..1 ModelStateEnum	The status of the model	direct
comments	* String	Comments about the model	direct
activities	* Activity	All of the activities that are part of the model	direct
objects	* Object	All of the objects that are part of the model	direct
provenances	* ProvenanceInfo	Model-level provenance information	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/gocam

Mappings

Mapping Type	Mapped Value
self	gocam:Model
native	gocam:Model

LinkML Source

Direct

name: Model
description: A model of a biological program consisting of a set of causally connected
  activities
from_schema: https://w3id.org/gocam
attributes:
  id:
    name: id
    description: The identifier of the model. Should be in gocam namespace.
    from_schema: https://w3id.org/gocam
    rank: 1000
    identifier: true
    domain_of:
    - Model
    - Activity
    - Object
    range: uriorcurie
    required: true
  title:
    name: title
    description: The human-readable descriptive title of the model
    from_schema: https://w3id.org/gocam
    rank: 1000
    slot_uri: dct:title
    domain_of:
    - Model
  taxon:
    name: taxon
    description: The primary taxon that the model is about
    from_schema: https://w3id.org/gocam
    rank: 1000
    domain_of:
    - Model
    range: TaxonTermObject
  status:
    name: status
    description: The status of the model
    from_schema: https://w3id.org/gocam
    aliases:
    - model state
    rank: 1000
    slot_uri: pav:status
    domain_of:
    - Model
    range: ModelStateEnum
  comments:
    name: comments
    description: Comments about the model
    from_schema: https://w3id.org/gocam
    rank: 1000
    slot_uri: rdfs:comment
    domain_of:
    - Model
    multivalued: true
  activities:
    name: activities
    description: All of the activities that are part of the model
    from_schema: https://w3id.org/gocam
    rank: 1000
    domain_of:
    - Model
    range: Activity
    multivalued: true
    inlined: true
    inlined_as_list: true
  objects:
    name: objects
    description: All of the objects that are part of the model. This includes terms
      as well as publications and database objects like gene. This is not strictly
      part of the data managed by the model, it is for convenience, and should be
      refreshed from outside.
    from_schema: https://w3id.org/gocam
    rank: 1000
    domain_of:
    - Model
    range: Object
    multivalued: true
    inlined: true
    inlined_as_list: true
  provenances:
    name: provenances
    description: Model-level provenance information
    from_schema: https://w3id.org/gocam
    rank: 1000
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined: true
    inlined_as_list: true

Induced

name: Model
description: A model of a biological program consisting of a set of causally connected
  activities
from_schema: https://w3id.org/gocam
attributes:
  id:
    name: id
    description: The identifier of the model. Should be in gocam namespace.
    from_schema: https://w3id.org/gocam
    rank: 1000
    identifier: true
    alias: id
    owner: Model
    domain_of:
    - Model
    - Activity
    - Object
    range: uriorcurie
  title:
    name: title
    description: The human-readable descriptive title of the model
    from_schema: https://w3id.org/gocam
    rank: 1000
    slot_uri: dct:title
    alias: title
    owner: Model
    domain_of:
    - Model
    range: string
  taxon:
    name: taxon
    description: The primary taxon that the model is about
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: taxon
    owner: Model
    domain_of:
    - Model
    range: TaxonTermObject
  status:
    name: status
    description: The status of the model
    from_schema: https://w3id.org/gocam
    aliases:
    - model state
    rank: 1000
    slot_uri: pav:status
    alias: status
    owner: Model
    domain_of:
    - Model
    range: ModelStateEnum
  comments:
    name: comments
    description: Comments about the model
    from_schema: https://w3id.org/gocam
    rank: 1000
    slot_uri: rdfs:comment
    alias: comments
    owner: Model
    domain_of:
    - Model
    range: string
    multivalued: true
  activities:
    name: activities
    description: All of the activities that are part of the model
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: activities
    owner: Model
    domain_of:
    - Model
    range: Activity
    multivalued: true
    inlined_as_list: true
  objects:
    name: objects
    description: All of the objects that are part of the model. This includes terms
      as well as publications and database objects like gene. This is not strictly
      part of the data managed by the model, it is for convenience, and should be
      refreshed from outside.
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: objects
    owner: Model
    domain_of:
    - Model
    range: Object
    multivalued: true
    inlined_as_list: true
  provenances:
    name: provenances
    description: Model-level provenance information
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: provenances
    owner: Model
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined_as_list: true