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Class: EnabledByGeneProductAssociation

An association between an activity and an individual gene product

URI: gocam:EnabledByGeneProductAssociation

classDiagram class EnabledByGeneProductAssociation click EnabledByGeneProductAssociation href "../EnabledByGeneProductAssociation" EnabledByAssociation <|-- EnabledByGeneProductAssociation click EnabledByAssociation href "../EnabledByAssociation" EnabledByGeneProductAssociation : evidence EnabledByGeneProductAssociation --> "*" EvidenceItem : evidence click EvidenceItem href "../EvidenceItem" EnabledByGeneProductAssociation : provenances EnabledByGeneProductAssociation --> "*" ProvenanceInfo : provenances click ProvenanceInfo href "../ProvenanceInfo" EnabledByGeneProductAssociation : term EnabledByGeneProductAssociation --> "0..1" GeneProductTermObject : term click GeneProductTermObject href "../GeneProductTermObject" EnabledByGeneProductAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
term 0..1
GeneProductTermObject		 A "term" that is an entity database object representing an individual gene pr... EnabledByAssociation
type 0..1
String		 The type of association Association
evidence *
EvidenceItem		 The set of evidence items that support the association Association
provenances *
ProvenanceInfo		 The set of provenance objects that provide metadata about who made the associ... Association

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/gocam

Mappings

Mapping Type Mapped Value
self gocam:EnabledByGeneProductAssociation
native gocam:EnabledByGeneProductAssociation

LinkML Source

Direct

name: EnabledByGeneProductAssociation
description: An association between an activity and an individual gene product
from_schema: https://w3id.org/gocam
is_a: EnabledByAssociation
slot_usage:
  term:
    name: term
    description: A "term" that is an entity database object representing an individual
      gene product.
    comments:
    - In the context of the GO workflow, the allowed values for this field come from
      the GPI file from an authoritative source. For example, the authoritative source
      for human is the EBI GOA group, and the GPI for this group consists of UniProtKB
      IDs (for proteins) and RNA Central IDs (for RNA gene products)
    - A gene identifier may be provided as a value here (if the authoritative GPI
      allows it). Note that the *interpretation* of the gene ID in the context of
      a GO-CAM model is the (spliceform and proteoform agnostic) *product* of that
      gene.
    examples:
    - value: UniProtKB:Q96Q11
      description: The protein product of the Homo sapiens TRNT1 gene
    - value: RNAcentral:URS00026A1FBE_9606
      description: An RNA product of this RNA central gene
    range: GeneProductTermObject

Induced

name: EnabledByGeneProductAssociation
description: An association between an activity and an individual gene product
from_schema: https://w3id.org/gocam
is_a: EnabledByAssociation
slot_usage:
  term:
    name: term
    description: A "term" that is an entity database object representing an individual
      gene product.
    comments:
    - In the context of the GO workflow, the allowed values for this field come from
      the GPI file from an authoritative source. For example, the authoritative source
      for human is the EBI GOA group, and the GPI for this group consists of UniProtKB
      IDs (for proteins) and RNA Central IDs (for RNA gene products)
    - A gene identifier may be provided as a value here (if the authoritative GPI
      allows it). Note that the *interpretation* of the gene ID in the context of
      a GO-CAM model is the (spliceform and proteoform agnostic) *product* of that
      gene.
    examples:
    - value: UniProtKB:Q96Q11
      description: The protein product of the Homo sapiens TRNT1 gene
    - value: RNAcentral:URS00026A1FBE_9606
      description: An RNA product of this RNA central gene
    range: GeneProductTermObject
attributes:
  term:
    name: term
    description: A "term" that is an entity database object representing an individual
      gene product.
    comments:
    - In the context of the GO workflow, the allowed values for this field come from
      the GPI file from an authoritative source. For example, the authoritative source
      for human is the EBI GOA group, and the GPI for this group consists of UniProtKB
      IDs (for proteins) and RNA Central IDs (for RNA gene products)
    - A gene identifier may be provided as a value here (if the authoritative GPI
      allows it). Note that the *interpretation* of the gene ID in the context of
      a GO-CAM model is the (spliceform and proteoform agnostic) *product* of that
      gene.
    examples:
    - value: UniProtKB:Q96Q11
      description: The protein product of the Homo sapiens TRNT1 gene
    - value: RNAcentral:URS00026A1FBE_9606
      description: An RNA product of this RNA central gene
    from_schema: https://w3id.org/gocam
    alias: term
    owner: EnabledByGeneProductAssociation
    domain_of:
    - EvidenceItem
    - EnabledByAssociation
    - TermAssociation
    range: GeneProductTermObject
  type:
    name: type
    description: The type of association.
    comments:
    - when instantiating Association objects in Python and other languages, it isn't
      necessary to populate this, it is auto-populated from the object class.
    from_schema: https://w3id.org/gocam
    rank: 1000
    designates_type: true
    alias: type
    owner: EnabledByGeneProductAssociation
    domain_of:
    - Association
    - Object
    range: string
  evidence:
    name: evidence
    description: The set of evidence items that support the association.
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: evidence
    owner: EnabledByGeneProductAssociation
    domain_of:
    - Association
    range: EvidenceItem
    multivalued: true
    inlined: true
  provenances:
    name: provenances
    description: The set of provenance objects that provide metadata about who made
      the association.
    from_schema: https://w3id.org/gocam
    alias: provenances
    owner: EnabledByGeneProductAssociation
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined: true
    inlined_as_list: true