Skip to content

Class: CellularAnatomicalEntityAssociation

An association between an activity and a cellular anatomical entity term

URI: gocam:CellularAnatomicalEntityAssociation

classDiagram class CellularAnatomicalEntityAssociation click CellularAnatomicalEntityAssociation href "../CellularAnatomicalEntityAssociation" TermAssociation <|-- CellularAnatomicalEntityAssociation click TermAssociation href "../TermAssociation" CellularAnatomicalEntityAssociation : evidence CellularAnatomicalEntityAssociation --> "*" EvidenceItem : evidence click EvidenceItem href "../EvidenceItem" CellularAnatomicalEntityAssociation : part_of CellularAnatomicalEntityAssociation --> "0..1" CellTypeAssociation : part_of click CellTypeAssociation href "../CellTypeAssociation" CellularAnatomicalEntityAssociation : provenances CellularAnatomicalEntityAssociation --> "*" ProvenanceInfo : provenances click ProvenanceInfo href "../ProvenanceInfo" CellularAnatomicalEntityAssociation : term CellularAnatomicalEntityAssociation --> "0..1" CellularAnatomicalEntityTermObject : term click CellularAnatomicalEntityTermObject href "../CellularAnatomicalEntityTermObject" CellularAnatomicalEntityAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
part_of 0..1
CellTypeAssociation		 Optional extension allowing hierarchical nesting of CCs direct
term 0..1
CellularAnatomicalEntityTermObject		 The ontology term that describes the nature of the association TermAssociation
type 0..1
String		 The type of association Association
evidence *
EvidenceItem		 The set of evidence items that support the association Association
provenances *
ProvenanceInfo		 The set of provenance objects that provide metadata about who made the associ... Association

Usages

used by used in type used
Activity occurs_in range CellularAnatomicalEntityAssociation

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/gocam

Mappings

Mapping Type Mapped Value
self gocam:CellularAnatomicalEntityAssociation
native gocam:CellularAnatomicalEntityAssociation

LinkML Source

Direct

name: CellularAnatomicalEntityAssociation
description: An association between an activity and a cellular anatomical entity term
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    range: CellularAnatomicalEntityTermObject
    bindings:
    - range: CellularAnatomicalEntityEnum
      obligation_level: REQUIRED
      binds_value_of: id
attributes:
  part_of:
    name: part_of
    description: Optional extension allowing hierarchical nesting of CCs
    from_schema: https://w3id.org/gocam
    domain_of:
    - Activity
    - BiologicalProcessAssociation
    - CellularAnatomicalEntityAssociation
    - CellTypeAssociation
    - GrossAnatomyAssociation
    range: CellTypeAssociation
    inlined: true

Induced

name: CellularAnatomicalEntityAssociation
description: An association between an activity and a cellular anatomical entity term
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    range: CellularAnatomicalEntityTermObject
    bindings:
    - range: CellularAnatomicalEntityEnum
      obligation_level: REQUIRED
      binds_value_of: id
attributes:
  part_of:
    name: part_of
    description: Optional extension allowing hierarchical nesting of CCs
    from_schema: https://w3id.org/gocam
    alias: part_of
    owner: CellularAnatomicalEntityAssociation
    domain_of:
    - Activity
    - BiologicalProcessAssociation
    - CellularAnatomicalEntityAssociation
    - CellTypeAssociation
    - GrossAnatomyAssociation
    range: CellTypeAssociation
    inlined: true
  term:
    name: term
    description: The ontology term that describes the nature of the association
    from_schema: https://w3id.org/gocam
    alias: term
    owner: CellularAnatomicalEntityAssociation
    domain_of:
    - EvidenceItem
    - EnabledByAssociation
    - TermAssociation
    range: CellularAnatomicalEntityTermObject
    bindings:
    - range: CellularAnatomicalEntityEnum
      obligation_level: REQUIRED
      binds_value_of: id
  type:
    name: type
    description: The type of association.
    comments:
    - when instantiating Association objects in Python and other languages, it isn't
      necessary to populate this, it is auto-populated from the object class.
    from_schema: https://w3id.org/gocam
    rank: 1000
    designates_type: true
    alias: type
    owner: CellularAnatomicalEntityAssociation
    domain_of:
    - Association
    - Object
    range: string
  evidence:
    name: evidence
    description: The set of evidence items that support the association.
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: evidence
    owner: CellularAnatomicalEntityAssociation
    domain_of:
    - Association
    range: EvidenceItem
    multivalued: true
    inlined: true
  provenances:
    name: provenances
    description: The set of provenance objects that provide metadata about who made
      the association.
    from_schema: https://w3id.org/gocam
    alias: provenances
    owner: CellularAnatomicalEntityAssociation
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined: true
    inlined_as_list: true