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Class: BiologicalProcessAssociation

An association between an activity and a biological process term

URI: gocam:BiologicalProcessAssociation

classDiagram class BiologicalProcessAssociation click BiologicalProcessAssociation href "../BiologicalProcessAssociation" TermAssociation <|-- BiologicalProcessAssociation click TermAssociation href "../TermAssociation" BiologicalProcessAssociation : evidence BiologicalProcessAssociation --> "*" EvidenceItem : evidence click EvidenceItem href "../EvidenceItem" BiologicalProcessAssociation : happens_during BiologicalProcessAssociation --> "0..1" PhaseTermObject : happens_during click PhaseTermObject href "../PhaseTermObject" BiologicalProcessAssociation : part_of BiologicalProcessAssociation --> "0..1" BiologicalProcessTermObject : part_of click BiologicalProcessTermObject href "../BiologicalProcessTermObject" BiologicalProcessAssociation : provenances BiologicalProcessAssociation --> "*" ProvenanceInfo : provenances click ProvenanceInfo href "../ProvenanceInfo" BiologicalProcessAssociation : term BiologicalProcessAssociation --> "0..1" BiologicalProcessTermObject : term click BiologicalProcessTermObject href "../BiologicalProcessTermObject" BiologicalProcessAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
happens_during 0..1
PhaseTermObject		 Optional extension describing where the BP takes place direct
part_of 0..1
BiologicalProcessTermObject		 Optional extension allowing hierarchical nesting of BPs direct
term 0..1
BiologicalProcessTermObject		 The ontology term that describes the nature of the association TermAssociation
type 0..1
String		 Association
evidence *
EvidenceItem		 Association
provenances *
ProvenanceInfo		 Association

Usages

used by used in type used
Activity part_of range BiologicalProcessAssociation

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/gocam

Mappings

Mapping Type Mapped Value
self gocam:BiologicalProcessAssociation
native gocam:BiologicalProcessAssociation

LinkML Source

Direct

name: BiologicalProcessAssociation
description: An association between an activity and a biological process term
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    range: BiologicalProcessTermObject
attributes:
  happens_during:
    name: happens_during
    description: Optional extension describing where the BP takes place
    from_schema: https://w3id.org/gocam
    rank: 1000
    domain_of:
    - BiologicalProcessAssociation
    range: PhaseTermObject
  part_of:
    name: part_of
    description: Optional extension allowing hierarchical nesting of BPs
    from_schema: https://w3id.org/gocam
    domain_of:
    - Activity
    - BiologicalProcessAssociation
    - CellularAnatomicalEntityAssociation
    - CellTypeAssociation
    - GrossAnatomyAssociation
    range: BiologicalProcessTermObject

Induced

name: BiologicalProcessAssociation
description: An association between an activity and a biological process term
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    range: BiologicalProcessTermObject
attributes:
  happens_during:
    name: happens_during
    description: Optional extension describing where the BP takes place
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: happens_during
    owner: BiologicalProcessAssociation
    domain_of:
    - BiologicalProcessAssociation
    range: PhaseTermObject
  part_of:
    name: part_of
    description: Optional extension allowing hierarchical nesting of BPs
    from_schema: https://w3id.org/gocam
    alias: part_of
    owner: BiologicalProcessAssociation
    domain_of:
    - Activity
    - BiologicalProcessAssociation
    - CellularAnatomicalEntityAssociation
    - CellTypeAssociation
    - GrossAnatomyAssociation
    range: BiologicalProcessTermObject
  term:
    name: term
    description: The ontology term that describes the nature of the association
    from_schema: https://w3id.org/gocam
    alias: term
    owner: BiologicalProcessAssociation
    domain_of:
    - EvidenceItem
    - EnabledByAssociation
    - TermAssociation
    range: BiologicalProcessTermObject
  type:
    name: type
    from_schema: https://w3id.org/gocam
    rank: 1000
    designates_type: true
    alias: type
    owner: BiologicalProcessAssociation
    domain_of:
    - Association
    - Object
    range: string
  evidence:
    name: evidence
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: evidence
    owner: BiologicalProcessAssociation
    domain_of:
    - Association
    range: EvidenceItem
    multivalued: true
    inlined: true
  provenances:
    name: provenances
    from_schema: https://w3id.org/gocam
    alias: provenances
    owner: BiologicalProcessAssociation
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined: true
    inlined_as_list: true