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Class: BiologicalProcessAssociation

An association between an activity and a biological process term

URI: gocam:BiologicalProcessAssociation

classDiagram class BiologicalProcessAssociation click BiologicalProcessAssociation href "../BiologicalProcessAssociation/" TermAssociation <|-- BiologicalProcessAssociation click TermAssociation href "../TermAssociation/" BiologicalProcessAssociation : evidence BiologicalProcessAssociation --> "*" EvidenceItem : evidence click EvidenceItem href "../EvidenceItem/" BiologicalProcessAssociation : happens_during BiologicalProcessAssociation --> "0..1" PhaseTermObject : happens_during click PhaseTermObject href "../PhaseTermObject/" BiologicalProcessAssociation : part_of BiologicalProcessAssociation --> "0..1" BiologicalProcessAssociation : part_of click BiologicalProcessAssociation href "../BiologicalProcessAssociation/" BiologicalProcessAssociation : provenances BiologicalProcessAssociation --> "*" ProvenanceInfo : provenances click ProvenanceInfo href "../ProvenanceInfo/" BiologicalProcessAssociation : term BiologicalProcessAssociation --> "0..1" BiologicalProcessTermObject : term click BiologicalProcessTermObject href "../BiologicalProcessTermObject/" BiologicalProcessAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
happens_during 0..1
PhaseTermObject		 Optional extension describing where the BP takes place direct
part_of 0..1
BiologicalProcessAssociation		 Optional extension allowing hierarchical nesting of BPs direct
term 0..1
BiologicalProcessTermObject		 The ontology term that describes the nature of the association TermAssociation
type 0..1
String		 The type of association Association
evidence *
EvidenceItem		 The set of evidence items that support the association Association
provenances *
ProvenanceInfo		 The set of provenance objects that provide metadata about who made the associ... Association

Usages

used by used in type used
Activity part_of range BiologicalProcessAssociation
BiologicalProcessAssociation part_of range BiologicalProcessAssociation

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/gocam

Mappings

Mapping Type Mapped Value
self gocam:BiologicalProcessAssociation
native gocam:BiologicalProcessAssociation

LinkML Source

Direct

name: BiologicalProcessAssociation
description: An association between an activity and a biological process term
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    range: BiologicalProcessTermObject
attributes:
  happens_during:
    name: happens_during
    description: Optional extension describing where the BP takes place
    from_schema: https://w3id.org/gocam
    rank: 1000
    domain_of:
    - BiologicalProcessAssociation
    range: PhaseTermObject
  part_of:
    name: part_of
    description: Optional extension allowing hierarchical nesting of BPs
    from_schema: https://w3id.org/gocam
    domain_of:
    - Activity
    - BiologicalProcessAssociation
    - CellularAnatomicalEntityAssociation
    - CellTypeAssociation
    - GrossAnatomyAssociation
    range: BiologicalProcessAssociation
    inlined: true

Induced

name: BiologicalProcessAssociation
description: An association between an activity and a biological process term
from_schema: https://w3id.org/gocam
is_a: TermAssociation
slot_usage:
  term:
    name: term
    range: BiologicalProcessTermObject
attributes:
  happens_during:
    name: happens_during
    description: Optional extension describing where the BP takes place
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: happens_during
    owner: BiologicalProcessAssociation
    domain_of:
    - BiologicalProcessAssociation
    range: PhaseTermObject
  part_of:
    name: part_of
    description: Optional extension allowing hierarchical nesting of BPs
    from_schema: https://w3id.org/gocam
    alias: part_of
    owner: BiologicalProcessAssociation
    domain_of:
    - Activity
    - BiologicalProcessAssociation
    - CellularAnatomicalEntityAssociation
    - CellTypeAssociation
    - GrossAnatomyAssociation
    range: BiologicalProcessAssociation
    inlined: true
  term:
    name: term
    description: The ontology term that describes the nature of the association
    from_schema: https://w3id.org/gocam
    alias: term
    owner: BiologicalProcessAssociation
    domain_of:
    - EvidenceItem
    - EnabledByAssociation
    - TermAssociation
    range: BiologicalProcessTermObject
  type:
    name: type
    description: The type of association.
    comments:
    - when instantiating Association objects in Python and other languages, it isn't
      necessary to populate this, it is auto-populated from the object class.
    from_schema: https://w3id.org/gocam
    rank: 1000
    designates_type: true
    alias: type
    owner: BiologicalProcessAssociation
    domain_of:
    - Association
    - Object
    range: string
  evidence:
    name: evidence
    description: The set of evidence items that support the association.
    from_schema: https://w3id.org/gocam
    rank: 1000
    alias: evidence
    owner: BiologicalProcessAssociation
    domain_of:
    - Association
    range: EvidenceItem
    multivalued: true
    inlined: true
  provenances:
    name: provenances
    description: The set of provenance objects that provide metadata about who made
      the association.
    from_schema: https://w3id.org/gocam
    alias: provenances
    owner: BiologicalProcessAssociation
    domain_of:
    - Model
    - Activity
    - EvidenceItem
    - Association
    range: ProvenanceInfo
    multivalued: true
    inlined: true
    inlined_as_list: true