Slot: with_or_from
Used with specific ECO codes to capture an additional identifier supporting the
evidence for the annotation. For example, it can identify another gene product to
which the annotated gene product is similar (ISS) or interacts with (IPI).
Population of the With/From is mandatory for certain evidence codes.
URI: go_standard_annotation_schema:with_or_from
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Annotation | An association between a gene product and a GO term, with an evidence code, a | no |
Properties
Type and Range
| Property | Value |
|---|---|
| Range | ExternalIdentifier |
| Domain Of | Annotation |
Cardinality and Requirements
| Property | Value |
|---|---|
| Multivalued | Yes |
Comments
- Cardinality must be 0 for evidence codes IDA, TAS, NAS, or ND
- Cardinality must be 1, >1 for IEA, IC, IGI, IPI, ISS & child terms of ISS
TODOs
- The GPAD spec makes a distinction between pipe- and comma-separated lists of With/From values. Decide if and how this should be represented in the schema.
Identifier and Mapping Information
Schema Source
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | go_standard_annotation_schema:with_or_from |
| native | go_standard_annotation_schema:with_or_from |
LinkML Source
name: with_or_from
description: 'Used with specific ECO codes to capture an additional identifier supporting
the
evidence for the annotation. For example, it can identify another gene product to
which the annotated gene product is similar (ISS) or interacts with (IPI).
Population of the With/From is mandatory for certain evidence codes.'
todos:
- The GPAD spec makes a distinction between pipe- and comma-separated lists of With/From
values. Decide if and how this should be represented in the schema.
comments:
- Cardinality must be 0 for evidence codes IDA, TAS, NAS, or ND
- Cardinality must be 1, >1 for IEA, IC, IGI, IPI, ISS & child terms of ISS
from_schema: https://w3id.org/geneontology/go-standard-annotation-schema
rank: 1000
domain_of:
- Annotation
range: external_identifier
required: false
multivalued: true