Enum: Evidence Type (EvidenceType)

The default ECO term for each GO evidence code, as listed in the ECO gaf-eco-mapping.txt file. Each permissible value has the corresponding GO evidence code as an alias.

URI: go_standard_annotation_schema:EvidenceType

Permissible Values

Value	Meaning	Additional Info
ECO:0000269	ECO:0000269	Title: experimental evidence used in manual assertion
ECO:0007005	ECO:0007005	Title: high throughput direct assay evidence used in manual assertion
ECO:0007007	ECO:0007007	Title: high throughput expression pattern evidence used in manual assertion
ECO:0007003	ECO:0007003	Title: high throughput genetic interaction phenotypic evidence used in manual assertion
ECO:0007001	ECO:0007001	Title: high throughput mutant phenotypic evidence used in manual assertion
ECO:0006056	ECO:0006056	Title: high throughput evidence used in manual assertion
ECO:0000318	ECO:0000318	Title: biological aspect of ancestor evidence used in manual assertion
ECO:0000319	ECO:0000319	Title: biological aspect of descendant evidence used in manual assertion
ECO:0000305	ECO:0000305	Title: curator inference used in manual assertion
ECO:0000314	ECO:0000314	Title: direct assay evidence used in manual assertion
ECO:0000501	ECO:0000501	Title: evidence used in automatic assertion
ECO:0000270	ECO:0000270	Title: expression pattern evidence used in manual assertion
ECO:0000317	ECO:0000317	Title: genomic context evidence used in manual assertion
ECO:0000316	ECO:0000316	Title: genetic interaction evidence used in manual assertion
ECO:0000320	ECO:0000320	Title: phylogenetic determination of loss of key residues evidence used in manual assertion
ECO:0000315	ECO:0000315	Title: mutant phenotype evidence used in manual assertion
ECO:0000353	ECO:0000353	Title: physical interaction evidence used in manual assertion
ECO:0000321	ECO:0000321	Title: rapid divergence from ancestral sequence evidence used in manual assertion
ECO:0000247	ECO:0000247	Title: sequence alignment evidence used in manual assertion
ECO:0000255	ECO:0000255	Title: match to sequence model evidence used in manual assertion
ECO:0000266	ECO:0000266	Title: sequence orthology evidence used in manual assertion
ECO:0000250	ECO:0000250	Title: sequence similarity evidence used in manual assertion
ECO:0000303	ECO:0000303	Title: author statement without traceable support used in manual assertion
ECO:0000307	ECO:0000307	Title: no evidence data found used in manual assertion
ECO:0000245	ECO:0000245	Title: automatically integrated combinatorial evidence used in manual assertion
ECO:0000304	ECO:0000304	Title: author statement supported by traceable reference used in manual assertion

Slots

Name	Description
evidence_type	The Evidence & Conclusion Ontology (ECO) identifier for the evidence code tha...

Notes

These permissible values are not yet checked against ECO for drift. See https://github.com/geneontology/go-standard-annotation-schema/issues/26

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/geneontology/go-standard-annotation-schema

LinkML Source

name: EvidenceType
description: The default ECO term for each GO evidence code, as listed in the ECO
  gaf-eco-mapping.txt file. Each permissible value has the corresponding GO evidence
  code as an alias.
title: Evidence Type
notes:
- These permissible values are not yet checked against ECO for drift. See https://github.com/geneontology/go-standard-annotation-schema/issues/26
from_schema: https://w3id.org/geneontology/go-standard-annotation-schema
see_also:
- http://purl.obolibrary.org/obo/eco/gaf-eco-mapping.txt
rank: 1000
permissible_values:
  ECO:0000269:
    text: ECO:0000269
    meaning: ECO:0000269
    title: experimental evidence used in manual assertion
    aliases:
    - EXP
  ECO:0007005:
    text: ECO:0007005
    meaning: ECO:0007005
    title: high throughput direct assay evidence used in manual assertion
    aliases:
    - HDA
  ECO:0007007:
    text: ECO:0007007
    meaning: ECO:0007007
    title: high throughput expression pattern evidence used in manual assertion
    aliases:
    - HEP
  ECO:0007003:
    text: ECO:0007003
    meaning: ECO:0007003
    title: high throughput genetic interaction phenotypic evidence used in manual
      assertion
    aliases:
    - HGI
  ECO:0007001:
    text: ECO:0007001
    meaning: ECO:0007001
    title: high throughput mutant phenotypic evidence used in manual assertion
    aliases:
    - HMP
  ECO:0006056:
    text: ECO:0006056
    meaning: ECO:0006056
    title: high throughput evidence used in manual assertion
    aliases:
    - HTP
  ECO:0000318:
    text: ECO:0000318
    meaning: ECO:0000318
    title: biological aspect of ancestor evidence used in manual assertion
    aliases:
    - IBA
  ECO:0000319:
    text: ECO:0000319
    meaning: ECO:0000319
    title: biological aspect of descendant evidence used in manual assertion
    aliases:
    - IBD
  ECO:0000305:
    text: ECO:0000305
    meaning: ECO:0000305
    title: curator inference used in manual assertion
    aliases:
    - IC
  ECO:0000314:
    text: ECO:0000314
    meaning: ECO:0000314
    title: direct assay evidence used in manual assertion
    aliases:
    - IDA
  ECO:0000501:
    text: ECO:0000501
    meaning: ECO:0000501
    title: evidence used in automatic assertion
    aliases:
    - IEA
  ECO:0000270:
    text: ECO:0000270
    meaning: ECO:0000270
    title: expression pattern evidence used in manual assertion
    aliases:
    - IEP
  ECO:0000317:
    text: ECO:0000317
    meaning: ECO:0000317
    title: genomic context evidence used in manual assertion
    aliases:
    - IGC
  ECO:0000316:
    text: ECO:0000316
    meaning: ECO:0000316
    title: genetic interaction evidence used in manual assertion
    aliases:
    - IGI
  ECO:0000320:
    text: ECO:0000320
    meaning: ECO:0000320
    title: phylogenetic determination of loss of key residues evidence used in manual
      assertion
    aliases:
    - IKR
  ECO:0000315:
    text: ECO:0000315
    meaning: ECO:0000315
    title: mutant phenotype evidence used in manual assertion
    aliases:
    - IMP
  ECO:0000353:
    text: ECO:0000353
    meaning: ECO:0000353
    title: physical interaction evidence used in manual assertion
    aliases:
    - IPI
  ECO:0000321:
    text: ECO:0000321
    meaning: ECO:0000321
    title: rapid divergence from ancestral sequence evidence used in manual assertion
    aliases:
    - IRD
  ECO:0000247:
    text: ECO:0000247
    meaning: ECO:0000247
    title: sequence alignment evidence used in manual assertion
    aliases:
    - ISA
  ECO:0000255:
    text: ECO:0000255
    meaning: ECO:0000255
    title: match to sequence model evidence used in manual assertion
    aliases:
    - ISM
  ECO:0000266:
    text: ECO:0000266
    meaning: ECO:0000266
    title: sequence orthology evidence used in manual assertion
    aliases:
    - ISO
  ECO:0000250:
    text: ECO:0000250
    meaning: ECO:0000250
    title: sequence similarity evidence used in manual assertion
    aliases:
    - ISS
  ECO:0000303:
    text: ECO:0000303
    meaning: ECO:0000303
    title: author statement without traceable support used in manual assertion
    aliases:
    - NAS
  ECO:0000307:
    text: ECO:0000307
    meaning: ECO:0000307
    title: no evidence data found used in manual assertion
    aliases:
    - ND
  ECO:0000245:
    text: ECO:0000245
    meaning: ECO:0000245
    title: automatically integrated combinatorial evidence used in manual assertion
    aliases:
    - RCA
  ECO:0000304:
    text: ECO:0000304
    meaning: ECO:0000304
    title: author statement supported by traceable reference used in manual assertion
    aliases:
    - TAS

Enum: Evidence Type (EvidenceType)

Permissible Values

Slots

See Also

Notes

Identifier and Mapping Information

Schema Source

LinkML Source