go-ontology

Design Patterns

Pattern Description
anatomical structure development This pattern is for classes representing developmental processes, differentiated by the anatomical structure or cell being developed.
anatomical structure formation This pattern is for classes representing formation of anatomical structures from their initial state, differentiated by the anatomical structure being formed. Not used for cells.
anatomical structure maturation This pattern is for classes representing the maturation of an anatomical structure or a cell, differentiated by the anatomical structure or cell being in its final state.
anatomical structure morphogenesis This pattern is for classes representing the generation and organization of the shape of an anatomical structure or a cell, differentiated by the anatomical structure or cell being generated.
anatomical structure organization TODO
antiporter activity This pattern is for classes representing antiporter activities, differentiated by the type of inputs.
binding TODO
biosynthetic process This pattern is for classes representing biosynthetic processes differentiated by their primary outputs.
bounding membrane of organelle TODO
catabolic process This pattern is for classes representing catabolic processes differentiated by their primary inputs.
cc assembly TODO
cc disassembly TODO
cc transport from to TODO
cell differentiation by mature cell type This pattern is for classes representing cell differentiation, differentiated by the resulting mature cell type.
cell fate commitment This pattern is for classes representing the commitment of cells to a specific cell type, differentiated by the type of cell.
cell fate determination This pattern is for classes representing the determination of cell fate, differentiated by the cell being differentiated.
cell specification This pattern is for classes representing the specification of cells, differentiated by the cell being specified.
cellular anatomical entity organization TODO
cell–cell signaling by start and end cell types This pattern is for classes representing cell–cell signaling, differentiated by the start and end cell types.
chemical transport TODO
chromosomal region TODO
establishment of protein localization to TODO
export across membrane TODO
import across membrane TODO
import across plasma membrane TODO
import into cell TODO
involved in x y TODO
membrane region TODO
metabolic process This pattern is for classes representing metabolic processes differentiated by their primary inputs or primary outputs.
molecular function activator activity This pattern is for representing a function that activates some molecular function, differentiated by the specific molecular function activated.
molecular function inhibitor activity This pattern is for representing a function that inhibits some molecular function, differentiated by the specific molecular function inhibited.
molecular function regulator activity This pattern is for representing a function that modulates some molecular function, differentiated by the specific molecular function modulated.
multi-organism process TODO
negative regulation This pattern is for classes representing types of negative regulation differentiated by the process they regulate.
negative regulation of characteristic Negative regulation of a particular characteristic.
occurs in TODO
part of cell component TODO
positive regulation This pattern is for classes representing types of positive regulation differentiated by the process they regulate.
positive regulation of characteristic Positive regulation of a particular characteristic.
protein complex by activity TODO
protein localization to TODO
regulation This pattern is for classes representing types of regulation differentiated by the process they regulate. One of three core patterns for regulation terms in the GO. Do not use this pattern for the 3 grouping classes: regulation of MF, regulation of BP, regulation of BQ
regulation by This pattern is for classes representing types of regulation differentiated by the process they regulate and the mechanism of regulation.
regulation of characteristic Regulation of a particular characteristic.
response to stimulus by stimulus type This pattern is for classes representing response to stimulus, differentiated by the type of stimulus.
signaling receptor activity by input This pattern is for classes representing signaling receptor activity, differentiated by the type of input.
single-organism process TODO
symporter activity This pattern is for classes representing symporter activities, differentiated by the type of inputs.
transmembrane import into cytosol TODO
transmembrane transport This pattern is for representing transmembrane transport, differentiated by the type of cargo.
transport of a cellular component Transport of a cellular component, differentiated by the component being transported.
vesicle-mediated transport differentiated by cargo This pattern is for representing vesicle-mediated transport, differentiated by the type of cargo.
vesicle-mediated transport differentiated by cargo and start and end locations This pattern is for representing transmembrane transport, differentiated by the type of cargo as well as the start and end locations.
vesicle-mediated transport differentiated by start and end locations This pattern is for representing vesicle-mediated transport, differentiated by the start and end locations.